Journal Articles
Hirayama, Akihiko, Sueyoshi, Mark N., Nakano, Takashi, Ota, Yuki, Kurita, Hiroyuki, Tasaki, Masaharu, Kuroiwa, Yoichi, Kato, Takahiro, Serizawa, Sadayoshi, Kojima, Keisuke, Al-Maamari, Rashid S., Hasegawa, Takeshi, Thomas-Hall, Skye R. and Schenk, Peer M. (2022). Development of large-scale microalgae production in the Middle East. Bioresource Technology, 343 126036, 126036. doi: 10.1016/j.biortech.2021.126036
Cui, Yi, Thomas-Hall, Skye R., Chua, Elvis T. and Schenk, Peer M. (2021). Development of a Phaeodactylum tricornutum biorefinery to sustainably produce omega-3 fatty acids and protein. Journal of Cleaner Production, 300 126839, 126839. doi: 10.1016/j.jclepro.2021.126839
Liu, Bingli, Eltanahy, Eladl E., Liu, Hongwei, Chua, Elvis T., Thomas-Hall, Skye R., Wass, Taylor J., Pan, Kehou and Schenk, Peer M. (2020). Growth-promoting bacteria double eicosapentaenoic acid yield in microalgae. Bioresource Technology, 316 123916, 123916. doi: 10.1016/j.biortech.2020.123916
Cui, Yi, Thomas‐Hall, Skye R., Chua, Elvis T. and Schenk, Peer M. (2020). Development of high‐level omega‐3 eicosapentaenoic acid (EPA) production from
Phaeodactylum tricornutum. Journal of Phycology, 57 (1) jpy.13082, 258-268. doi: 10.1111/jpy.13082
Chua, Elvis T., Dal'Molin, Cristiana, Thomas-Hall, Skye, Netzel, Michael E., Netzel, Gabriele and Schenk, Peer M. (2020). Cold and dark treatments induce omega-3 fatty acid and carotenoid production in Nannochloropsis oceanica. Algal Research, 51 102059, 102059. doi: 10.1016/j.algal.2020.102059
Chua, Elvis T., Shekh, Ajam Y., Eltanahy, Eladl, Thomas-Hall, Skye R. and Schenk, Peer M. (2020). Effective harvesting of Nannochloropsis microalgae using mushroom ahitosan: a pilot-scale study. Frontiers in Bioengineering and Biotechnology, 8 771, 771. doi: 10.3389/fbioe.2020.00771
Brown, Reuben B., Wass, Taylor J., Thomas-Hall, Skye R. and Schenk, Peer M. (2019). Chromosome-scale genome assembly of two Australian Nannochloropsis oceanica isolates exhibiting superior lipid characteristics. Microbiology Resource Announcements, 8 (48) e01288-19. doi: 10.1128/mra.01288-19
Cui, Yi, Thomas-Hall, Skye R. and Schenk, Peer M. (2019). Phaeodactylum tricornutum microalgae as a rich source of omega-3 rich oil: progress in lipid induction techniques towards industry adoption. Food Chemistry, 297 124937, 124937. doi: 10.1016/j.foodchem.2019.06.004
Correa, Diego F., Beyer, Hawthorne L., Possingham, Hugh P., Thomas‐Hall, Skye R. and Schenk, Peer M. (2019). Global mapping of cost‐effective microalgal biofuel production areas with minimal environmental impact. GCB Bioenergy, 11 (8) gcbb.12619, 914-929. doi: 10.1111/gcbb.12619
Correa, Diego F., Beyer, Hawthorne L., Fargione, Joseph E., Hill, Jason D., Possingham, Hugh P., Thomas-Hall, Skye R. and Schenk, Peer M. (2019). Towards the implementation of sustainable biofuel production systems. Renewable and Sustainable Energy Reviews, 107, 250-263. doi: 10.1016/j.rser.2019.03.005
Manzoor, Maleeha, Jabeen, Faiza, Thomas-Hall, Skye R., Altaf, Javaria, Younis, Tahira, Schenk, Peer M. and Qazi, Javed Iqbal (2019). Sugarcane bagasse as a novel low/no cost organic carbon source for growth of Chlorella sp. BR2. Biofuels, 12 (9), 1-7. doi: 10.1080/17597269.2019.1580970
Chua, Elvis T., Brunner, Manuel, Atkin, Rob, Eltanahy, Eladl, Thomas-Hall, Skye R. and Schenk, Peer M. (2019). The ionic liquid cholinium arginate is an efficient solvent for extracting high-value Nannochloropsis sp. lipids. ACS Sustainable Chemistry and Engineering, 7 (2) acssuschemeng.8b05448, 2538-2544. doi: 10.1021/acssuschemeng.8b05448
Ma, Ruijuan, Thomas-Hall, Skye R., Chua, Elvis T., Eltanahy, Eladl, Netzel, Michael E., Netzel, Gabriele, Lu, Yinghua and Schenk, Peer M. (2018). Blue light enhances astaxanthin biosynthesis metabolism and extraction efficiency in Haematococcus pluvialis by inducing haematocyst germination. Algal Research, 35, 215-222. doi: 10.1016/j.algal.2018.08.023
Chua, Elvis T., Eltanahy, Eladl, Jung, Heejae, Uy, Manuel, Thomas-Hall, Skye R. and Schenk, Peer M. (2018). Efficient harvesting of Nannochloropsis microalgae via optimized chitosan-mediated flocculation. Global Challenges, 3 (1), 1800038. doi: 10.1002/gch2.201800038
González-González, Lina María, Zhou, Lihong, Astals, Sergi, Thomas-Hall, Skye R., Eltanahy, Eladl, Pratt, Steven, Jensen, Paul D. and Schenk, Peer M. (2018). Biogas production coupled to repeat microalgae cultivation using a closed nutrient loop. Bioresource Technology, 263, 625-630. doi: 10.1016/j.biortech.2018.05.039
Ma, Ruijuan, Thomas-Hall, Skye R., Chua, Elvis T., Eltanahy, Eladl, Netzel, Michael E., Netzel, Gabriele, Lu, Yinghua and Schenk, Peer M (2018). LED power efficiency of biomass, fatty acid, and carotenoid production in Nannochloropsis microalgae. Bioresource Technology, 252, 118-126. doi: 10.1016/j.biortech.2017.12.096
Aslam, Ambreen, Thomas-Hall, Skye R., Manzoor, Maleeha, Jabeen, Faiza, Iqbal, Munawar, Uz Zaman, Qamar, Schenk, Peer M. and Asif Tahir, M. (2018). Mixed microalgae consortia growth under higher concentration of CO2 from unfiltered coal fired flue gas: Fatty acid profiling and biodiesel production. Journal of Photochemistry and Photobiology. B, Biology, 179, 126-133. doi: 10.1016/j.jphotobiol.2018.01.003
Ma, Ruijuan, Thomas-Hall, Skye R., Chua, Elvis T., Alsenani, Faisal, Eltanahy, Eladl, Netzel, Michael E., Netzel, Gabriele, Lu, Yinghua and Schenk, Peer M. (2017). Gene expression profiling of astaxanthin and fatty acid pathways in Haematococcus pluvialis in response to different LED lighting conditions. Bioresource Technology, 250, 591-602. doi: 10.1016/j.biortech.2017.11.094
Correa, Diego F., Beyer, Hawthorne L., Possingham, Hugh P., Thomas-Hall, Skye R. and Schenk, Peer M. (2017). Biodiversity impacts of bioenergy production: microalgae vs. first generation biofuels. Renewable and Sustainable Energy Reviews, 74, 1131-1146. doi: 10.1016/j.rser.2017.02.068
Lim, David K. Y., Schuhmann, Holger, Thomas-Hall, Skye R., Chan, Kenneth C. K., Wass, Taylor J., Aguilera, Felipe, Adarme-Vega, T. Catalina, Dal'Molin, Cristiana G. O., Thorpe, Glen J., Batley, Jacqueline, Edwards, David and Schenk, Peer M. (2017). RNA-Seq and metabolic flux analysis of Tetraselmis sp. M8 during nitrogen starvation reveals a two-stage lipid accumulation mechanism. Bioresource Technology, 244 (Pt 2), 1281-1293. doi: 10.1016/j.biortech.2017.06.003
Aslam, Ambreen, Thomas-Hall, Skye R., Mughal, Tahira Aziz and Schenk, Peer M. (2017). Selection and adaptation of microalgae to growth in 100% unfiltered coal-fired flue gas. Bioresource Technology, 233, 271-283. doi: 10.1016/j.biortech.2017.02.111
Naghdi, Forough Ghasemi, Bai, Xue, Thomas-Hall, Skye R., Sharma, Kalpesh and Schenk, Peer M. (2016). Lipid extraction from wet Chaetoceros muelleri culture and evaluation of remaining defatted biomass. Algal Research, 20, 205-212. doi: 10.1016/j.algal.2016.10.011
Narala, Rakesh R., Garg, Sourabh, Sharma, Kalpesh K., Thomas-Hall, Skye R., Deme, Miklos, Li, Yan and Schenk, Peer M. (2016). Comparison of microalgae cultivation in photobioreactor, open raceway pond, and a two-stage hybrid system. Frontiers in Energy Research, 4 (AUG) 29, 1-10. doi: 10.3389/fenrg.2016.00029
Duong, Van Thang, Thomas-Hall, Skye R. and Schenk, Peer M. (2015). Growth and lipid accumulation of microalgae from fluctuating brackish and sea water locations in South East Queensland—Australia. Frontiers in Plant Science, 6 (MAY) 359, 1-8. doi: 10.3389/fpls.2015.00359
Naghdi, Forough Ghasemi , Thomas-Hall, Skye R., Durairatnam, Reuben, Pratt, Steven and Schenk, Peer M.P. (2014). Comparative effects of biomass pre-treatments for direct and indirect transesterification to enhance microalgal lipid recovery. Frontiers in Energy Research, 2 (DEC) 57, 57. doi: 10.3389/fenrg.2014.00057
Adarme-Vega, T. Catalina, Thomas-Hall, Skye R., Lim, David K. Y. and Schenk, Peer M. (2014). Effects of long chain fatty acid synthesis and associated gene expression in microalga Tetraselmis sp.. Marine Drugs, 12 (6), 3381-3398. doi: 10.3390/md12063381
Adarme-Vega, T. Catalina, Thomas-Hall, Skye R. and Schenk, Peer M. (2014). Towards sustainable sources for omega-3 fatty acids production. Current Opinion in Biotechnology, 26, 14-18. doi: 10.1016/j.copbio.2013.08.003
Sewelam, Nasser, Kazan, Kemal, Thomas-Hall, Skye R., Kidd, Brendan N., Manners, John M. and Schenk, Peer M. (2013). Ethylene response factor 6 is a regulator of reactive oxygen species signaling in Arabidopsis. PLoS One, 8 (8) e70289, e70289.1-e70289.13. doi: 10.1371/journal.pone.0070289
Lim, David K. Y., Garg, Sourabh, Timmins, Matthew, Zhang, Eugene S. B., Thomas-Hall, Skye R., Schuhmann, Holger, Li, Yan and Schenk, Peer M. (2012). Isolation and evaluation of oil-producing microalgae from subtropical coastal and brackish waters. Plos One, 7 (7) e40751, e40751-1-e40751-13. doi: 10.1371/journal.pone.0040751
Prentis, Peter J., Woolfit, Megan, Thomas-Hall, Skye R., Ortiz-Barrientos, Daniel, Pavasovic, Ana, Lowe, Andrew J. and Schenk, Peer M. (2010). Massively parallel sequencing and analysis of expressed sequence tags in a successful invasive plant. Annals of Botany, 106 (6), 1009-1017. doi: 10.1093/aob/mcq201
Timmins, M, Zhou, W. X., Rupprecht, J, Lim, L, Thomas-Hall, S. R., Doebbe, A, Kruse, O, Hankamer, B, Marx, U. C., Smith, S. M. and Schenk, P. M. (2009). The metabolome of chlamydomonas reinhardtii following induction of anaerobic H-2 production by sulfur depletion. Journal of Biological Chemistry, 284 (35), 23415-23425. doi: 10.1074/jbc.M109.003541
Timmins, Matthew, Thomas-Hall, Skye R., Darling, Aaron, Zhang, Eugene, Hankamer, Ben, Marx, Ute C and Schenk, Peer M. (2009). Phylogenetic and molecular analysis of hydrogen-producing green algae. Journal of Experimental Botany, 60 (6), 1691-1702. doi: 10.1093/jxb/erp052
Nguyen, A.V., Thomas-Hall, S. R., Malnoe, A., Timmins, M., Mussgnug, J.H., Rupprecht, J., Kruse, O., Hankamer, B. and Schenk, P.M.P. (2008). Transcriptome for photobiological hydrogen production induced by sulfur deprivation in the green alga Chlamydomonas reinhardtii. Eukaryotic Cell, 7 (11), 1965-1979. doi: 10.1128/EC.00418-07
McGrath, K., Thomas-Hall, S. R., Cheng, C.T., Leo, L., Alexa, A., Schmidt, Susanne and Schenk, Peer M.P. (2008). Isolation and analysis of mRNA from environmental microbial communities. Journal of Microbiological Methods, 75 (2), 172-176. doi: 10.1016/j.mimet.2008.05.019
Schenk, P. M., Thomas-Hall, S. R., Nguyen, A. V., Manners, J. M., Kazan, K. and Spangenberg, G. (2008). Identification of plant defence genes in canola using Arabidopsis cDNA microarrays. Plant Biology, 10 (5), 539-547. doi: 10.1111/j.1438-8677.2008.00056.x
Schenk, Peer M., Thomas-Hall, Skye R., Stephens, Evan, Marx, Ute C., Mussgnug, Jan H., Posten, Clemens, Kruse, Olaf and Hankamer, Ben (2008). Second Generation Biofuels: High-Efficiency Microalgae for Biodiesel Production. BioEnergy Research, 1 (1), 20-43. doi: 10.1007/s12155-008-9008-8
Mussgnug, Jan H., Thomas-Hall, Skye, Rupprecht, Jens, Foo, Alexander, Klassen, Viktor, McDowall, Alasdair, Schenk, Peer M., Kruse, Olaf and Hankamer, Ben (2007). Engineering photosynthetic light capture: Impacts on improved solar energy to biomass conversion. Plant Biotechnology Journal, 5 (6), 802-814. doi: 10.1111/j.1467-7652.2007.00285.x
Thomas-Hall, Skye, Campbell, Paul R., Carlens, Katrien, Kawanishi, Emi, Swennen, Rony, Sagi, László and Schenk, Peer M. (2007). Phylogenetic and molecular analysis of the ribulose-1,5-bisphosphate carboxylase small subunit gene family in banana. Journal of Experimental Botany, 58 (10), 2685-2697. doi: 10.1093/jxb/erm129
Henderson, J., Pattemore, J. A., Porchun, S. C., Hayden, H. L., Van Brunschot, S., Grice, K. R. E., Peterson, R. A., Thomas-Hall, S. R. and Aitken, E. A. B. (2006). Black Sigatoka disease: new technologies to strengthen eradication strategies in Australia. Australasian Plant Pathology, 35 (2), 181-193. doi: 10.1071/AP06017
Wilkinson, P. M., Thomas-Hall, S. R., Marney, T. S. and Shivas, R. G. (2005). First record of Passalora calotropidis in Australia and its generic position. Australasian Plant Pathology, 34 (1), 95-98. doi: 10.1071/AP04074
Kruse, O., Rupprecht, J., Bader, K. P., Thomas-Hall, S., Schenk, P. M., Finazzi, G. and Hankamer, B. (2005). Improved photobiological H-2 production in engineered green algal cells. Journal of Biological Chemistry, 280 (40), 34170-34177. doi: 10.1074/jbc.M503840200
Guffogg, SP, Thomas-Hall, S, Holloway, P and Watson, K (2004). A novel psychrotolerant member of the hymenomycetous yeasts from Antarctica: Cryptococcus watticus sp nov.. International Journal of Systematic And Evolutionary Microbiology, 54 (1), 275-277. doi: 10.1099/ijs.0.02877-0
Thomas-Hall, S, Watson, K and Scorzetti, G (2002). Cryptococcus statzelliae sp nov and three novel strains of Cryptococcus victoriae, yeasts isolated from Antarctic soils. International Journal of Systematic And Evolutionary Microbiology, 52 (6), 2303-2308. doi: 10.1099/ijs.0.02293-0
Thomas-Hall, S and Watson, K (2002). Cryptococcus nyarrowii sp nov., a basidiomycetous yeast from Antarctica. International Journal of Systematic And Evolutionary Microbiology, 52 (3), 1033-1038. doi: 10.1099/ijs.0.01940-0
Tsimako, M, Guffogg, S, Thomas-Hall, S and Watson, K (2002). Resistance to UVB radiation in Antarctic yeasts. Redox Report, 7 (5), 312-314. doi: 10.1179/135100002125000866
Conference Papers
Correa, Diego F., Beyer, Hawthorne L., Possingham, Hugh P., Fargione, Joseph E., Hill, Jason, Thomas-Hall, Skye R. and Schenk, Peer M. (2018). Potential conflicts between microalgal biodiesel production and areas of high ecological importance at national scales. European Congress of Conservation Biology, Jyväskylä, Finland, 12-15 June 2018. Jyväskylä, Finland: Jyvaskyla University Open Science Centre. doi: 10.17011/conference/eccb2018/109047
Schenk, P.M.P., Thomas-Hall, S.R., Nguyen, A.V., Malnoe, A., Timmins, M., Stephens, E., Mussgnug, J.H., Rupprecht, J., Kruse, O. and Hankamer, B. (2008). Transcriptional profiling of photosynthetic genes during photo-biological hydrogen production in the green alga Chlamydomonas reinhardtii. 17th World Hydrogen Energy Conference, Brisbane, Qld, Australia, 15-19 June, 2008. Brisbane, Qld, Australia: Australian Institute of Energy.
Manners, J., Kazan, K., McGrath, K., Dombrecht, B., Edgar, C., Thomas-Hall, S., Schenk, P. M. and Desmond, O. (2005). Transcription factor genes controlling plant defence. ComBio2005, Adelaide Convention Centre, 25 - 29 September, 2005. Kent Town SA: Australian Society of Biochemistry and Molecular Biology Inc.
Schenk, P. M. P., Anderson, J., Badruzsaufari, B., Desmond, O. J., Thomas-Hall, S. R., McGrath, K. C., Timmins, M., Maclean, D. J., Ebert, P. R., Manners, J. and Kazan, K. (2004). Plant defence signaling in Arabidopsis. ComBio2004, Perth, Australia, 26-30 September, 2004. Kent Town, Australia: ASBMB.