Emeritus Professor Kaye Basford
Emeritus Professor
School of Agriculture and Food Sustainability
Hartley Teakle Building (83), Room S309, St Lucia campus
Researcher biography
Professor of Biometry
Research Interests:
Research at the interface between applied statistics and quantitative genetics with extensive publications on the analysis and interpretation of multi-way data from large-scale plant breeding experiments, particularly those involving genotype by environment interaction. Theory and application of pattern analysis - clustering and ordination procedures - appropriate for data collected from plant breeding experiments and/or stored in germplasm databases. Analysis, interpretation and impact of genotype x environment interaction for primary economic plant attributes (yield and quality) and data management, integration and analysis (bioinformatics).
Other Activities:
Past President of the International Biometric Society (2010-11) and the Statistical Society of Australia Incorporated (2005-07). Life member of the Statistical Society of Australia Incorporated (2010). Australian Medal for Agricultural Science from the Australian Institute of Agricultural Science and Technology (1998).
Previous Head of the School of Land, Crop and Food Sciences (2001-10).
Fellow of the Australian Academy of Technological Sciences and Engineering, Australian Institute of Company Directors, Australian Institute of Agricultural Science and Technology and Institute of Statisticians (which has merged with the Royal Statistical Society).
Member of the Board of Trustees of the International Rice Research Institute (2013-15).
Publications
Books
Basford, K.E. and Tukey, J.W. (1999). Graphical Analysis of Multiresponse Data: Illustrated with a Plant Breeding Trial. Boca Raton, Fla. ; Cambridge, England: Chapman & Hall/CRC.
McLachlan, Geoffrey J. and Basford, Kaye E. (1988). Mixture models : inference and applications to clustering. New York, United States: Marcel Dekker.
Book Chapters
Arief, Vivi N., DeLacy, Ian H. and Basford, Kaye E. (2020). Design and analysis of multi-year field trials for annual crops. Quantitative genetics, genomics and plant breeding. (pp. 178-193) Wallingford, United Kingdom: CABI. doi: 10.1079/9781789240214.0178
Basford, Kaye E. (2017). Federer, Walter Theodore. Wiley StatsRef: Statistics Reference Online. (pp. 1-6) Chichester, West Sussex, United Kingdom: Wiley. doi: 10.1002/9781118445112.stat07927
Basford, Kaye E. (2014). Beyond the statistical fringe. Topics from Australian conferences on teaching statistics: OZCOTS 2008-2012. (pp. 59-70) edited by Helen MacGillivray, Michael A. Martin and Brian Phillips. New York, NY, United States: Springer. doi: 10.1007/978-1-4939-0603-1_5
Basford, K. E., Morgenthaler, S. and Tukey, J. W. (2001). Multipolishing large two-way tables. Probability and Statistical Models with Applications. (pp. 485-502) edited by Ch. A. Charalambides, M. V. Koutras and N. Balakrishnan. New York, USA: Chapman & Hall/CRC.
Basford, K. E. (2001). Statistical interaction with quantitative geneticists to enhance impact from plant breeding programs. Statistics in Genetics and in the Environmental Sciences. (pp. 1-15) edited by L. T. Fernhold, S. Morgenthaler and W. Stahel. Berlin: Birkhauser Verlag. doi: 10.1007/978-3-0348-8326-9_1
Kelly, A. M. and Basford, K. E. (2000). Pattern analysis in grassland and animal production systems. Field and Laboratory Methods for Grassland and Animal Production Research. (pp. 9-28) edited by L. 't Mannetje and R. M. Jones. Wallingford: CABI Publishing.
Cooper, M., DeLacy, I. H. and Basford, K. E. (1996). Relationships among analytical methods used to analyse genotypic adaptation in multi-environment trials. Plant adaptation and crop improvement. (pp. 193-224) edited by M. Cooper and G. L. Hammer. Wallingford, United Kingdom: CAB International.
Basford, K. E., Kroonenberg, P. M. and Cooper, M. (1996). Three-mode analytical methods for crop improvement programs. Plant adaptation and crop improvement. (pp. 291-305) edited by M. Cooper and G. L. Hammer. Wallingford, United Kingdom: CAB International.
DeLacy, I. H., Basford, K. E., Cooper, M. and Fox, P. N. (1996). Retrospective analysis of historical data sets from multi-environment trials - theoretical development. Plant adaptation and crop improvement. (pp. 243-267) edited by M. Cooper and G. L. Hammer. Wallingford, United Kingdom: CAB International.
DeLacy, I. H., Basford, K. E., Cooper, M., Bull, J. K. and McLaren, C. G. (1996). Analysis of multi-environment trials - an historical perspective. Plant adaptation and crop improvement. (pp. 39-124) edited by M. Cooper and G. L. Hammer. Wallingford, United Kingdom: CAB International.
Journal Articles
Arief, Vivi N., DeLacy, Ian H., Payne, Thomas and Basford, Kaye E. (2022). Visualising the pattern of long‐term genotype performance by leveraging a genomic prediction model. Australian and New Zealand Journal of Statistics, 64 (2), 297-312. doi: 10.1111/anzs.12362
Jahufer, M. Z. Z., Arojju, Sai Krishna, Faville, Marty J., Ghamkhar, Kioumars, Arief, Vivi, Yang, Wen-Hsi, Luo, Dongwen, Sun, Mingzhu, DeLacy, Ian H., Griffiths, Andrew G., Eady, Colin, Clayton, Will, Stewart, Alan V., George, Richard M., Hoyos-Villegas, Valerio, Basford, Kaye E. and Barrett, Brent (2021). Deterministic and stochastic modelling of impacts from genomic selection and phenomics on genetic gain for perennial ryegrass dry matter yield. Scientific Reports, 11 (1) 13265, 1-18. doi: 10.1038/s41598-021-92537-w
Ratnasiri, Anura W. G., Lakshminrusimha, Satyan, Dieckmann, Ronald A., Lee, Henry C., Gould, Jeffrey B., Parry, Steven S., Arief, Vivi N., DeLacy, Ian H., DiLibero, Ralph J. and Basford, Kaye E. (2020). Maternal and infant predictors of infant mortality in California, 2007–2015. PloS One, 15 (8) e0236877, e0236877. doi: 10.1371/journal.pone.0236877
Ratnasiri, Anura W. G., Gordon, Lauren, Dieckmann, Ronald A., Lee, Henry C., Parry, Steven S., Arief, Vivi N., DeLacy, Ian H., Lakshminrusimha, Satyan, DiLibero, Ralph J. and Basford, Kaye E. (2020). Smoking during pregnancy and adverse birth and maternal outcomes in California, 2007 to 2016. American Journal of Perinatology, 37 (13), 1364-1376. doi: 10.1055/s-0039-1693689
Banks, Robert, Wendling, Laura, Basford, Kaye, Ringrose-Voase, Anthony and Banks, Vera (2019). Beneficial soil profile differences associated with tropical grass pastures on sodic texture contrast soils in Northern New South Wales. Soil Research, 58 (2), 207-218. doi: 10.1071/sr19140
Ratnasiri, Anura W. G., Lee, Henry C., Lakshminrusimha, Satyan, Parry, Steven S., Arief, Vivi N., DeLacy, Ian H., Yang, Jo-Shing, DiLibero, Ralph J., Logan, Julia and Basford, Kaye E. (2019). Trends in maternal prepregnancy body mass index (BMI) and its association with birth and maternal outcomes in California, 2007–2016: a retrospective cohort study. PLoS ONE, 14 (9) e0222458, e0222458. doi: 10.1371/journal.pone.0222458
Arief, Vivi N., Desmae, Haile, Hardner, Craig, DeLacy, Ian H., Gilmour, Arthur, Bull, Jason K. and Basford, Kaye E. (2019). Utilization of multiyear plant breeding data to better predict genotype performance. Crop Science, 59 (2), 480-490. doi: 10.2135/cropsci2018.03.0182
Hoyos-Villegas, Valerio, Arief, Vivi N, Yang, Wen-Hsi, Sun, Mingzhu, DeLacy, Ian H, Barrett, Brent A, Jahufer, Zulfi and Basford, Kaye E (2019). QuLinePlus: extending plant breeding strategy and genetic model simulation to cross-pollinated populations—case studies in forage breeding. Heredity, 122 (5), 684-695. doi: 10.1038/s41437-018-0156-0
Ratnasiri, Anura W.G., Parry, Steven S., Arief, Vivi N., DeLacy, Ian H., Lakshminrusimha, Satyan, Halliday, Laura A., DiLibero, Ralph J. and Basford, Kaye E. (2018). Temporal trends, patterns, and predictors of preterm birth in California from 2007 to 2016, based on the obstetric estimate of gestational age. Maternal Health, Neonatology and Perinatology, 4 (1) 25, 25. doi: 10.1186/s40748-018-0094-0
Ratnasiri, Anura W. G., Parry, Steven S., Arief, Vivi N., DeLacy, Ian H., Halliday, Laura A., DiLibero, Ralph J. and Basford, Kaye E. (2018). Recent trends, risk factors, and disparities in low birth weight in California, 2005-2014: a retrospective study. Maternal Health, Neonatology and Perinatology, 4 (1) 15, 15. doi: 10.1186/s40748-018-0084-2
Arief, Vivi Noviati, DeLacy, I. H., Basford, K. E. and Dieters, M. J. (2017). Application of a dendrogram seriation algorithm to extract pattern from plant breeding data. Euphytica, 213 (4) 85. doi: 10.1007/s10681-017-1870-z
Basford, Kaye, Bennett, Richard, Daly, Joanne, Augustin, Mary Ann, Barlow, Snow, Gregson, Tony, Lee, Alice, Chen, Deli and Wenham, Matt (2017). Delivering food safety. Frontiers of Agricultural Science and Engineering, 4 (1), 1-4. doi: 10.15302/J-FASE-2016123
Hunt, Lynette A. and Basford, Kaye E. (2016). Comparing classical criteria for selecting intra-class correlated features in Multimix. Computational Statistics and Data Analysis, 103, 350-366. doi: 10.1016/j.csda.2016.05.018
Garcia-Pena, Marisol, Arciniegas-Alarcon, Sergio, Basford, Kaye and Dias, Carlos Tadeu dos Santos (2016). Analysis of sunflower data from a multi-attribute genotype ×environment trial in Brazil. Communications in Biometry and Crop Science, 11 (2), 127-139.
Tian, Ting, McLachlan, Geoffrey J., Dieter, Mark J. and Basford, Kaye E. (2015). Application of multiple imputation for missing values in three-way three-mode multi-environment trial data. PLoS One, 10 (12) e0144370, e0144370.1-e0144370.25. doi: 10.1371/journal.pone.0144370
Basford, Kaye (2015). Using our worldwide networks to promote collaboration. ATSE Focus (190), 3-4.
Arief, Vivi N., DeLacy, Ian H., Crossa, Jose, Payne, Thomas, Singh, Ravi, Braun, Hans-J., Tian, Ting, Basford, Kaye E. and Dieters, Mark J. (2015). Evaluating testing strategies for plant breeding field trials: redesigning a CIMMYT international wheat nursery. Crop Science, 55 (1), 164-177. doi: 10.2135/cropsci2014.06.0415
Ceron-Rojas, J. Jesus, Crossa, Jose, Arief, Vivi N., Basford, Kaye, Rutkoski, Jessica, Jarquin, Diego, Alvarado, Gregorio, Beyene, Yoseph, Semagn, Kassa and DeLacy, Ian (2015). A genomic selection index applied to simulated and real data. G3: Genes, Genomes, Genetics, 5 (10), 2155-2164. doi: 10.1534/g3.115.019869
Basford, K. E. and Harch, B. D. (2014). Statistics critical in securing our food supply. ATSE Focus (182), 10-11.
Basford, Kaye E. (2013). IBS: transformation of our governance. Biometrics, 69 (2), 300-300. doi: 10.1111/biom.12034
Arief, Vivi N., DeLacy, Ian H., Wenzl, Peter, Dreisigacker, Susanne, Crossa, Jose, Dieters, Mark J. and Basford, Kaye E. (2013). Using molecular marker order to compare genetic structure in plant populations undergoing selection. Journal of Environmental Statistics, 4 (4).
Basford, Kaye E., McLachlan, Geoffrey J. and Rathnayake, Suren I. (2013). On the classification of microarray gene-expression data. Briefings in Bioinformatics, 14 (4) bbs056, 402-410. doi: 10.1093/bib/bbs056
Redden, R.J., Kroonenberg, P. M. and Basford, K. E. (2012). Adaptation analysis of diversity in adzuki germplasm introduced into Australia. Crop and Pasture Science, 63 (2), 142-154. doi: 10.1071/CP11327
Hardner, C, Dieters, M, DeLacy, I, Neal, J, Fletcher, S, Dale, G and Basford, K (2011). Identifying deployment zones for Eucalyptus camaldulensis × E. globulus and × E. grandis hybrids using factor analytic modelling of genotype by environment interaction. Australian Forestry, 74 (1), 30-35. doi: 10.1080/00049158.2011.10676343
Hardner, Craig M., Dieters, Mark, Dale, Glenn, DeLacy, Ian and Basford, Kaye E. (2010). Patterns of genotype-by-environment interaction in diameter at breast height at age 3 for eucalypt hybrid clones grown for reafforestation of lands affected by salinity. Tree Genetics & Genomes, 6 (6), 833-851. doi: 10.1007/s11295-010-0295-9
Basford, Kaye (2010). Research the key to world food security. ATSE Focus, 160, 36-37.
Arief, V. N., Kroonenberg, P. M., DeLacy, I. H., Dieters, M. J., Crossa, J., Dreisigacker, S., Braun, H. -J. and Basford, K. E. (2010). Construction and three-way ordination of the Wheat Phenome Atlas. Journal of Applied Probability and Statistics, 5 (1), 95-118.
Redden, Robert J., Basford, Kaye E., Kroonenberg, Pieter M., Islam, F.M. Amirul, Ellis, Rodney, Wang, Shumin, Cao, Yongsheng, Zong, Xuxiao and Wang, Xiaoming (2009). Variation in adzuki bean (Vigna angularis) germplasm grown in China (vol 49:3 (774) 2009). Crop Science, 49 (6), 2414-2414. doi: 10.2135/cropsci2008.03.0175er
Redden, R.J., Basford, K.E., Kroonenberg, P. M., Islam, F.M.A., Ellis, R., Wang, S., Yongsheng, C., Zong, X. and Wang, X. (2009). Variation in adzuki bean (Vigna angularis) germplasm grown in China. Crop Science, 49 (3), 771-782. doi: 10.2135/cropsci2008.03.0175
Pappalardo, Francesco, Halling-Brown, Mark D., Rapin, Nicolas, Zhang, Ping, Alemani, Davide, Emerson, Andrew, Paci, Paola, Duroux, Patrice, Pennisi, Marzio, Palladini, Arianna, Miotto, Olivio, Churchill, Daniel, Rossi, Elda, Shepherd, Adrian J., Moss, David S., Castiglione, Filippo, Bernaschi, Massimo, Lefranc, Marie-Paule, Brunak, Soren, Motta, Santo, Lollini, Pier-Luigi, Basford, Kaye E. and Brusic, Vladimir (2009). ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization. Briefings in Bioinformatics, 10 (3), 330-340. doi: 10.1093/bib/bbp014
Pappalardo, Francesco, Zhang, Ping, Halling-Brown, Mark, Basford, Kaye E., Scalia, Antonio, Shepherd, Adrian, Moss, David, Motta, Santo and Brusic, Vladimir (2008). Computational simulations of the immune system for personalized medicine: State of the art and challenges. Current Pharmacogenomics and Personalized Medicine, 6 (4), 260-271. doi: 10.2174/187569208786733839
Basford, Kaye E. (2007). Maths matters. ATSE Focus, 147, 10-11.
Islam, A. F., Basford, K. E., Redden, R. and Beebe, S. (2006). Preliminary evaluation of the common bean core collection at CIAT. Plant Genetic Resources Newsletter, 145, 29-37.
Ellis, R. N., Kroonenberg, P. M., Harch, B. D. and Basford, K. E. (2006). Non-linear principal components analysis: an alternative method for finding patterns in environmental data. Environmetrics, 17 (1), 1-11. doi: 10.1002/env.738
Meier, Elizabeth A., Thorburn, Peter J., Wegener, Malcolm K. and Basford, Kaye E. (2006). The availability of nitrogen from sugarcane trash on contrasting soils in the wet tropics of North Queensland. Nutrient Cycling In Agroecosystems, 75 (1-3), 101-114. doi: 10.1007/s10705-006-9015-0
Kroonenberg, P. M., Basford, K. E. and Gemperline, P. J. (2004). Grouping three-mode data with mixture methods: The case of the diseased blue crabs. Journal of Chemometrics, 18 (11), 508-518. doi: 10.1002/cem.896
Ellis, R. N., Basford, K. E., Leslie, J. K., Hogarth, D. M. and Cooper, M. (2004). A methodology for analysis of sugarcane productivity trends - 2. Comparing variety trials with commercial productivity. Australian Journal of Agricultural Research, 55 (2), 109-116. doi: 10.1071/AR03074
Lawes, R. A., Wegener, M. K., Basford, K. E. and Lawn, R. J. (2004). The evaluation of the spatial and temporal stability of sugarcane farm performance based on yield and commercial cane sugar. Australian Journal of Agricultural Research, 55 (3), 335-344. doi: 10.1071/AR03169
Basford, K. E., Federer, W. T. and DeLacy, I. H. (2004). Mixed model formulations for multi-environment trials. Agronomy Journal, 96 (1), 143-147. doi: 10.2134/agronj2004.0143
Qiao, C. G., Basford, K. E., DeLacy, I. H. and Cooper, M. (2004). Advantage of single-trial models for response to selection in wheat breeding multi-environment trials. Theoretical And Applied Genetics, 108 (7), 1256-1264. doi: 10.1007/s00122-003-1541-4
Islam, F. M. A., Beebe, S., Munoz, M., Tohme, J., Redden, R. J. and Basford, K. E. (2004). Using molecular markers to assess the effect of introgression on quantitative attributes of common bean in the Andean gene pool. Theoretical And Applied Genetics, 108 (2), 243-252. doi: 10.1007/s00122-003-1437-3
Mullen, B. F., Shelton, H. M., Gutteridge, R. C. and Basford, K. E. (2003). Agronomic evaluation of Leucaena. Part 1. Adaptation to environmental challenges in multi-environment trials. Agroforestry Systems, 58 (2), 77-92. doi: 10.1023/A:1026068215337
Mullen, B. F., Gabunada, F., Shelton, H. M., Stur, W. W. and Basford, K. E. (2003). Agronomic evaluation of Leucaena. Part 2. Productivity of the genus for forage production in subtropical Australia and humid-tropical Philippines. Agroforestry Systems, 58 (2), 93-107. doi: 10.1023/A:1026040631267
Islam, F. M. A., Rengifo, J., Redden, R. J., Basford, K. E. and Beebe, S. E. (2003). Association between seed coat polyphenolics (tannins) and disease resistance in common bean. Plant Foods For Human Nutrition, 58 (4), 285-297. doi: 10.1023/B:QUAL.0000040283.51023.c2
Olive, R. J. and Basford, K. E. (2003). A longitudinal index study of orthodontic stability and relapse. Australian Orthodontic Journal, 19 (2), 47-55.
Irwin, J. A. G., Musial, J. M., Mackie, J. M. and Basford, K. E. (2003). Utility of cotyledon and detached leaf assays for assessing root reactions of lucerne to Phytophthora root rot caused by Phytophthora medicaginis. Australasian Plant Pathology, 32 (2), 263-268. doi: 10.1071/AP03006
Islam, F. M. A., Basford, K. E., Jara, C., Redden, R. J. and Beebe, S. (2002). Seed compositional and disease resistance differences among gene pools in cultivated common bean. Genetic Resources And Crop Evolution, 49 (3), 285-293. doi: 10.1023/A:1015510428026
Wong, Andrew, Monsour, Paul A., Moule, Alex J. and Basford, Kaye E. (2002). A comparison of Kodak Ultraspeed and Ektaspeed Plus dental X-ray films for the detection of dental caries. Australian Dental Journal, 47 (1), 27-29. doi: 10.1111/j.1834-7819.2002.tb00299.x
Islam, F. M. A., Basford, K. E., Redden, R. J., Jara, C. and Beebe, S. (2002). Patterns of resistance to angular leaf spot, anthracnose and common bacterial blight in common bean germplasm. Australian Journal of Experimental Agriculture, 42 (4), 481-490. doi: 10.1071/EA01035
Musial, J. M., Basford, K. E. and Irwin, J. A. G. (2002). Analysis of genetic diversity within Australian lucerne cultivars and implications for future genetic improvement. Australian Journal of Agricultural Research, 53 (6), 629-636. doi: 10.1071/AR01178
Meier, E. A., Thorburn, P. J., Wegener, M. K. and Basford, K. E. (2002). A Conceptual Analysis of Nitrogen From Trash in the Wet Tropics. International Sugar Journal (May-June), 8-11.
Islam, F. M. A., Basford, K. E., Redden, R. J., Gonzalez, A. V., Kroonenberg, P. M. and Beebe, S. (2002). Genetic variability in cultivated common bean beyond the two major gene pools. Genetic Resources And Crop Evolution, 49 (3), 271-283. doi: 10.1023/A:1015567513005
Lawes, R. A., McDonald, L. M., Wegener, M. K., Basford, K. E. and Lawn, R. J. (2002). Factors affecting cane yield and commercial cane sugar in the Tully district. Australian Journal of Experimental Agriculture, 42 (4), 473-480. doi: 10.1071/EA01020
Moule, Alex J., Wong, Andrew, Monsour, Paul A. and Basford, Kaye E. (2001). A comparison of Kodak Ultraspeed and Ektaspeed Plus dental x-ray films for use in endodontics. Australian Dental Journal, 46 (2), 95-99. doi: 10.1111/j.1834-7819.2001.tb00563.x
Cooper, M., Woodruff, D. R., Philips, I. G., Basford, K. E. and Gilmour, A. R. (2001). Erratum: "Genotype-by-management interactions for grain yield and grain protein concentration of wheat" (Field Crops Research (2001) 69 (47-67) PII: S0378429000001313). Field Crops Research, 70 (1), 87-88. doi: 10.1016/S0378-4290(01)00134-4
Hunt, L. A. and Basford, K. E. (2001). Fitting a mixture model to three-mode three-way data with missing information. Journal of Classification, 18 (2), 209-226. doi: 10.1007/s00357-001-0016-z
Ellis, R. N., Basford, K. E., Cooper, M., Leslie, J. K. and Byth, D. E. (2001). A methodology for analysis of sugarcane productivity trends - I. Analysis across districts. Australian Journal of Agricultural Research, 52 (10), 1001-1009. doi: 10.1071/AR00130
Cooper, M., Woodruff, D. R., Phillips, I. G., Basford, K. E. and Gilmour, A. R. (2001). Genotype-by-management interactions for grain yield and grain protein concentration of wheat. Field Crops Research, 69 (1), 47-67. doi: 10.1016/S0378-4290(00)00131-3
Qiao, C. G., Basford, K. E., DeLacy, I. H. and Cooper, M. (2000). Evaluation of experimental designs and spatial analyses in wheat breeding trials. Theoretical and Applied Genetics, 100 (1), 9-16. doi: 10.1007/s001220050002
Lawes, R. A., Wegener, M. K., Basford, K. E. and Lawn, R. J. (2000). Commercial cane sugar trends in the Tully sugar district. Australian Journal of Experimental Agriculture, 40 (7), 969-973. doi: 10.1071/EA00035
DeLacy, I. H., Rajaram, S., Cooper, M., Fox, P. N. and Basford, K. E. (2000). The effect of the accumulation of disease resistance genes on the long-term association of a global sample of environments for testing spring bread wheat. Theoretical and Applied Genetics, 101 (7), 1164-1172. doi: 10.1007/s001220051593
McLachlan, G. J., Peel, D., Basford, K. E. and Adams, P. (1999). The EMMIX software for the fitting of mixtures of normal and t-components. Journal of Statistical Software, 4 (2).
Hunt, Lynette A. and Basford, Kaye E. (1999). Fitting a mixture model to three-mode three-way data with categorical and continuous variables. Journal of Classification, 16 (2), 283-296. doi: 10.1007/s003579900057
Podlich, D. W., Cooper, M. and Basford, K. E. (1999). Computer simulation of a selection strategy to accommodate genotype-environment interactions in a wheat recurrent selection programme. Plant Breeding, 118 (1), 17-28. doi: 10.1046/j.1439-0523.1999.118001017.x
Harch, B. D., Basford, K. E., DeLacy, I. H. and Lawrence, P. K. (1999). The analysis of large scale data taken from the world groundnut (Arachis hypogaea L.) germplasm collection. II. Two-way data with mixed data types. Euphytica, 105 (2), 73-82. doi: 10.1023/A:1003415929910
Kempton, R, Mead, R, Engel, B, ter Braak, CJF, Nelder, JA, Morton, R, Green, P, Molenberghs, G, Basford, K, Longford, NT, Gilmour, SG, Butler, N, Eilers, PHC and Pettitt, T (1999). The analysis of designed experiments and longitudinal data by using smoothing splines - Discussion. Journal of the Royal Statistical Society Series C-Applied Statistics, 48, 300-311.
Basford, Kaye E. (1998). Whatever your work, make sure it is fun. Agricultural Science, 11, 5.
Basford, K. E. and Cooper, M. (1998). Genotypexenvironment interactions and some considerations of their implications for wheat breeding in Australia. Australian Journal of Agricultural Research, 49 (2), 153-174. doi: 10.1071/A97035
Basford, K. E., Mclachlan, G. J. and York, M. G. (1997). Modelling the distribution of stamp paper thickness via finite normal mixtures: The 1872 Hidalgo stamp issue of Mexico revisited. Journal of Applied Statistics, 24 (2), 169-179.
Chapman, Scott C., Crossa, José, Basford, Kaye E. and Kroonenberg, Pieter M. (1997). Genotype by environment effects and selection for drought tolerance in tropical maize. II. Three-mode pattern analysis. Euphytica, 95 (1), 11-20. doi: 10.1023/A:1002922527795
Harch, B. D., Basford, K. E., DeLacy, I. H. and Lawrence, P. K. (1997). The analysis of large scale data taken from the world groundnut (Arachis hypogaea L.) germplasm collection I. Two-way quantitative data. Euphytica, 95 (1), 27-38. doi: 10.1023/A:1002971207770
Basford, K. E., McLachlan, G. J. and York, M. G. (1997). Modelling the distribution of stamp paper thickness via finite normal mixtures: The 1872 Hidalgo stamp issue of Mexico revisited. Journal of Applied Statistics, 24 (2), 169-180. doi: 10.1080/02664769723783
Basford, Kay E. and Tukey, John W. (1997). Graphical profiles as an aid to understanding plant breeding experiments. Journal of Statistical Planning and Inference, 57 (1), 93-107. doi: 10.1016/S0378-3758(96)00038-9
Fabrizius, MA, Cooper, M and Basford, KE (1997). Genetic analysis of variation for grain yield and protein concentration in two wheat crosses. Australian Journal of Agricultural Research, 48 (5), 605-614. doi: 10.1071/A96152
Basford, K. E., Greenway, D. R., McLachlan, G. J. and Peel, D. (1997). Standard errors of fitted component means of normal mixtures. Computational Statistics, 12 (1), 1-17.
Kroonenberg, P. M., Harch, B. D., Basford, K. E. and Cruickshank, A. (1997). Combined Analysis of Categorical and Numerical Descriptors of Australian Groundnut Accessions Using Nonlinear Principal Component Analysis. Journal of Agricultural, Biological, and Environmental Statistics, 2 (3), 294-312. doi: 10.2307/1400447
Boulton, JL, Gage, JP, Vincent, PF and Basford, KE (1996). A laboratory study of dimensional changes for three elastomeric impression materials using custom and stock trays. Australian Dental Journal, 41 (6), 398-404. doi: 10.1111/j.1834-7819.1996.tb06026.x
Harch, BD, Basford, KE, DeLacy, IH, Lawrence, PK and Cruickshank, A (1996). Mixed data types and the use of pattern analysis on the Australian groundnut germplasm data. Genetic Resources and Crop Evolution, 43 (4), 363-376. doi: 10.1007/BF00132957
Crossa, J, Basford, K, Taba, S, Delacy, I and Silva, E (1995). 3-Mode Analyses of Maize Using Morphological and Agronomic Attributes Measured in Multilocational Trials. Crop Science, 35 (5), 1483-1491. doi: 10.2135/cropsci1995.0011183X003500050036x
Harch, B. D., Basford, K. E., Delacy, I. H., Lawrence, P. K. and Cruickshank, A. (1995). Patterns of diversity in fatty-acid composition in the Australian groundnut germplasm collection. Genetic Resources and Crop Evolution, 42 (3), 243-256. doi: 10.1007/BF02431259
Kroonenberg, PM, Basford, KE and Vandam, M (1995). Classifying Infants in the Strange Situation with 3-Way Mixture Method of Clustering. British Journal of Psychology, 86 (3), 397-418. doi: 10.1111/j.2044-8295.1995.tb02760.x
Basford, KE and Tukey, JW (1995). Intercomparing Residuals to Find Outliers in Randomized Blocks. Australian Journal of Agricultural Research, 46 (2), 451-461. doi: 10.1071/AR9950451
Kroonenberg, PM, Basford, KE and Ebskamp, Agm (1995). 3-Way Cluster and Component Analysis of Maize Variety Trials. Euphytica, 84 (1), 31-42. doi: 10.1007/BF01677554
Bull, JK, Cooper, M and Basford, KE (1994). A Procedure for Investigating the Number of Genotypes Required to Provide a Stable Classification of Environments. Field Crops Research, 38 (1), 47-56. doi: 10.1016/0378-4290(94)90031-0
Bull, JK, Basford, KE, Cooper, M and Delacy, IH (1994). Enhanced Interpretation of Pattern Analyses of Environments - the Use of Blocks. Field Crops Research, 37 (1), 25-32. doi: 10.1016/0378-4290(94)90078-7
Bull, JK, Basford, KE, Delacy, IH and Cooper, M (1993). Determining Appropriate Group Number and Composition for Data Sets Containing Repeated Check Cultivars. Field Crops Research, 31 (3-4), 369-383. doi: 10.1016/0378-4290(93)90074-W
Keay, P. A., Freer, T. J. and Basford, K. E. (1993). Orthodontic treatment need and the dental aesthetic index. Australian Orthodontic Journal, 13 (1), 4-7.
M.Pithuncharurnlap M.PithuncharurnlapM.Pithuncharurnlap M.PithuncharurnlapM.https://api.elsevier.com/content/author/author_id/57191012068 (1993). NEIGHBOUR ANALYSIS WITH ADJUSTMENT FOR INTERPLOT COMPETITION. Australian Journal of Statistics, 35 (3), 263-270. doi: 10.1111/j.1467-842X.1993.tb01334.x
Bull, JK, Basford, KE, Delacy, IH and Cooper, M (1992). Classifying Genotypic Data From Plant-Breeding Trials - a Preliminary Investigation Using Repeated Checks. Theoretical and Applied Genetics, 85 (4), 461-469. doi: 10.1007/BF00222328
Sugerman, PB, Voltz, MJ, Savage, NW, Basford, KE and Seymour, GJ (1992). Phenotypic and Functional-Analysis of Peripheral-Blood Lymphocytes in Oral Lichen-Planus. Journal of Oral Pathology & Medicine, 21 (10), 445-450. doi: 10.1111/j.1600-0714.1992.tb00972.x
Bull, JK, Cooper, M, Delacy, IH, Basford, KE and Woodruff, DR (1992). Utility of Repeated Checks for Hierarchical-Classification of Data From Plant-Breeding Trials. Field Crops Research, 30 (1-2), 79-95. doi: 10.1016/0378-4290(92)90058-H
Pithuncharurnlap, M., Basford, K. E. and Cullis, B. R. (1992). NEAREST NEIGHBOUR ANALYSIS OF UNEQUALLY REPLICATED TRIALS. Australian Journal of Statistics, 34 (1), 1-9. doi: 10.1111/j.1467-842X.1992.tb01037.x
Zhang, C. Z., Young, W. G. and Basford, K. E. (1992). Automated microdensitometry of nucleolar organizer regions using microspectrophoto‐microscopy. Journal of Microscopy, 167 (2), 233-237. doi: 10.1111/j.1365-2818.1992.tb03232.x
Bull, JK, Hogarth, DM and Basford, KE (1992). Impact of Genotype X Environment Interaction On Response to Selection in Sugarcane. Australian Journal of Experimental Agriculture, 32 (6), 731-737. doi: 10.1071/EA9920731
Federer, WT and Basford, KE (1991). Competing Effects Designs and Models for 2-Dimensional Field Arrangements. Biometrics, 47 (4), 1461-1472. doi: 10.2307/2532399
Ivory, DA, Kaewmeechai, S, Delacy, IH and Basford, KE (1991). Analysis of the Environmental Component of Genotype X Environment Interaction in Crop Adaptation Evaluation. Field Crops Research, 28 (1-2), 71-84. doi: 10.1016/0378-4290(91)90075-7
Basford, KE, Kroonenberg, PM and Delacy, IH (1991). 3-Way Methods for Multiattribute Genotype X Environment Data - An Illustrated Partial Survey. Field Crops Research, 27 (1-2), 131-157. doi: 10.1016/0378-4290(91)90027-S
Ballard, J. W. O., Zalucki, M. P. and Basford, K. E. (1991). Colonization of perspex strips by larvae of Austrosimulium bancrofti (Taylor) near Ipswich, Queensland. Hydrobiologia, 218 (3), 255-263. doi: 10.1007/BF00038839
Sullivan, B, Freer, TJ, Vautin, D and Basford, KE (1991). Occlusal Contacts - Comparison of Orthodontic Patients, Posttreatment Patients, and Untreated Controls. Journal of Prosthetic Dentistry, 65 (2), 232-237. doi: 10.1016/0022-3913(91)90167-U
Chia, WK, Stevens, L and Basford, KE (1990). Dimensional Change of Impressions On Sterilization. Australian Dental Journal, 35 (1), 23-26. doi: 10.1111/j.1834-7819.1990.tb03022.x
Basford, KE, Kroonenberg, PM, Delacy, IH and Lawrence, PK (1990). Multiattribute Evaluation of Regional Cotton Variety Trials. Theoretical and Applied Genetics, 79 (2), 225-234. doi: 10.1007/BF00225956
Kroonenberg, PM and Basford, KE (1989). An Investigation of Multi-Attribute Genotype Response Across Environments Using 3-Mode Principal Component Analysis. Euphytica, 44 (1-2), 109-123. doi: 10.1007/BF00022605
Darveniza, M, Cheong, K and Basford, KE (1989). Cement Spacing for the One-Step Post-Core and Crown - a New Laboratory Technique. Australian Dental Journal, 34 (1), 52-59. doi: 10.1111/j.1834-7819.1989.tb03006.x
Staples, G., Freer, T. J. and Basford, K. (1988). Partial-mouth periodontal examination in post-orthodontic subjects. Australian orthodontic journal, 10 (3), 162-164.
Darveniza, M, Basford, KE, Meek, J and Stevens, L (1987). The Effects of Surface-Roughness and Surface-Area On the Retention of Crowns Luted with Zinc Phosphate Cement. Australian Dental Journal, 32 (6), 446-457. doi: 10.1111/j.1834-7819.1987.tb01297.x
Staples, G., Freer, T. J. and Basford, K. (1987). The periodontal health of post-orthodontic subjects. Australian orthodontic journal, 10 (2), 105-109.
Chapman, PJ, Ganendran, A, Scott, RJ and Basford, KE (1987). Attitudes and Knowledge of Nursing Staff in Relation to Management of Postoperative Pain. Australian and New Zealand Journal of Surgery, 57 (7), 447-450. doi: 10.1111/j.1445-2197.1987.tb01395.x
Duriyaprapan, S, Britten, EJ and Basford, KE (1986). The Effect of Temperature On Growth, Oil Yield and Oil Quality of Japanese Mint. Annals of Botany, 58 (5), 729-736. doi: 10.1093/oxfordjournals.aob.a087236
Lee, S. M., Freer, T. J. and Basford, K. E. (1986). Microleakage at the etched enamel-resin interface with bonded orthodontic brackets. Australian orthodontic journal, 9 (3), 270-275.
Seliga, Michelle E., Freer, Terence J. and Basford, Kay E. (1986). Matching of lateral cephalograms by means of similarity coefficients. Australian Orthodontic Journal, 9 (3), 276-281.
Lee, S. M. H., Freer, T. J. and Basford, K. E. (1986). Microleakage at the etched enamel-resin interface. Australian Orthodontic Journal, 9, 270-275.
Basford, KE (1985). Cluster-Analysis Via Normal Mixture-Models. Bulletin of the Australian Mathematical Society, 32 (3), 473-475. doi: 10.1017/S0004972700002586
Basford, KE and McLachlan, GJ (1985). Likelihood Estimation with Normal Mixture-Models. Applied Statistics-Journal of the Royal Statistical Society Series C, 34 (3), 282-289. doi: 10.2307/2347474
Basford, KE and McLachlan, GJ (1985). The Mixture Method of Clustering Applied to 3-Way Data. Journal of Classification, 2 (1), 109-125. doi: 10.1007/BF01908066
Hacker, JB, Strickland, RW and Basford, KE (1985). Genetic-Variation in Sodium and Potassium Concentration in Herbage of Digitaria-Milanjiana, and its Relation to Provenance. Australian Journal of Agricultural Research, 36 (2), 201-212. doi: 10.1071/AR9850201
Basford, K. E. and McLachlan, G. J. (1985). Estimation of allocation rates in a cluster-analysis context. Journal of the American Statistical Association, 80 (390), 286-293. doi: 10.2307/2287884
Basford, KE and McLachlan, GJ (1985). Cluster-Analysis in a Randomized Complete Block Design. Communications in Statistics-Theory and Methods, 14 (2), 451-463. doi: 10.1080/03610928508828924
Basford, KE (1982). The Use of Multidimensional-Scaling in Analyzing Multi-Attribute Genotype Response Across Environments. Australian Journal of Agricultural Research, 33 (3), 473-480. doi: 10.1071/AR9820473
Olive, R and Basford, K (1981). Reliability and Validity of Lower Third Molar Space-Assessment Techniques. American Journal of Orthodontics and Dentofacial Orthopedics, 79 (1), 45-53. doi: 10.1016/0002-9416(81)90100-7
Olive, R. J. and Basford, K. E. (1981). Transverse dento-skeletal relationships and third molar impaction. Angle Orthodontist, 51 (1), 41-47.
Savage, NW, Basford, KE, Adkins, KF and Kruger, BJ (1981). Dental Students At the University-of-Queensland - Entrance and Performance 1960 to 1979. Australian Dental Journal, 26 (3), 146-152. doi: 10.1111/j.1834-7819.1981.tb03934.x
Greenhill, R. and Basford, K. (1979). The effects of varying diagnostic records on subjective orthodontic treatment priority assessments. Australian orthodontic journal, 6 (2), 55-63.
Basford, KE and Delacy, IH (1979). Use of Matrix Specifications in Defining Gene-Action in Genotypic Value Models and Generation Mean Analysis. Theoretical and Applied Genetics, 55 (5), 225-229. doi: 10.1007/BF00268116
Vincent, PF, Stevens, L and Basford, KE (1977). Comparison of Casting Ability of Precious and Nonprecious Alloys for Porcelain Veneering. Journal of Prosthetic Dentistry, 37 (5), 527-536. doi: 10.1016/0022-3913(77)90167-6
Patterson, CM, Basford, KE and Kruger, BJ (1976). Effect of Fluoride On Immature Enamel Matrix Protein of Rat. Archives of Oral Biology, 21 (2), 131-132. doi: 10.1016/0003-9969(76)90083-2
Basford, KE, Patterson, CM and Kruger, BJ (1976). Multivariate Analyses of Influence of Mottling Doses of Fluoride On Amino-Acids of Enamel Matrix Protein of Rat Incisors. Archives of Oral Biology, 21 (2), 121-129. doi: 10.1016/0003-9969(76)90082-0
Conference Papers
Zhang, Min, Arief, Vivi, McLachlan, Geoffrey, Nguyen, Quan and Basford, Kaye (2022). Exploratory data analysis of TCGA skin cutaneous melanoma RNA-seq data. Australasian Applied Statistics Conference (AASC), Inverloch, VIC Australia, 28 November - 2 December 2022.
Lambrides, Christopher , Basford, Kaye , DeLacy, Ian , Cooper, Mark , Hardner, Craig , Godwin, Ian , Dieters, Mark and Arief, Vivi (2022). The pursuit of excellence; some reflections after 50+ years of plant breeding at The University of Queensland (9771). Australasian Plant Breeding Conference, Gold Coast, QLD, Australia, 9-11 May 2022.
Rouholamin, Sepideh, Arief, Vivi, Delacy, Ian and Basford, Kaye (2020). Pedigree Data Analysis of a Wheat Population. TropAg 2019, Brisbane, QLD Australia, 11-13 November 2019. Basel, Switzerland: MDPI. doi: 10.3390/proceedings2019036148
Arief, V., DeLacy, I., Dieters, M. and Basford, K. (2016). The value of long-term multi-year multi-location trial data to evaluate risk in prediction of early cultivar performance. 5th International Conference on Quantitative Genetics, Madison, WI, United States, 12-17 June 2016.
Shewayrga, H., Arief, V. N., Hardner, C. M., DeLacy, I. H. and Basford, K. E. (2016). Spatial analysis for trials with limited replication. Australasian Applied Statistical Conference, Bermagui, NSW, Australia, 28 November - 2 December 2016.
Hunt, L. A. and Basford, K. E. (2016). Model selection for three-mode three-way data. XXVIIIth International Biometric Conference, Victoria, BC, Canada, 9-15 July 2016.
Tian, T., McLachlan, G., Dieters, M. and Basford, K. (2014). Application of multiple imputation to incomplete three-way three-mode multi-environment trial data. International Biometric Conference, Florence (Italy), 6-11 July 2014. Florence, Italy: International Biometric Society.
Arief, Vivi N., DeLacy, Ian H., Dieters, Mark J. and Basford, Kaye E. (2014). Application of marker-trait association profiles in simulating plant breeding strategies. 15th Australasian Plant Breeding Conference, St Kilda, Victoria, Australia, 26-29 October 2014.
Tian, Ting, McLachlan, Geoff, Dieters, Mark and Basford, Kaye (2013). Evaluating methods of estimating missing values for three-way three-mode multi-environment trial data. Biometrics by the Canals: The International Biometric Society Australasian Region Conference 2013, Mandura, WA, Australia, 1-5 December, 2013.
Desmae, Haile, DeLacy, Ian, Arief, Vivi and Basford, Kaye (2013). Three interpretations of line-mean heritability calculated from plant breeding field trials. WBA Brisbane 2013: Wheat Breeding Assembly, Brisbane, QLD, Australia, 16-19 July, 2013. Brisbane, QLD, Australia:
Hunt, Lynette and Basford, Kaye (2013). Model selection for the Multimix class of mixture models. Biometrics by the Canals: The International Biometric Society Australasian Region Conference 2013, Mandura, WA, Australia, 1-5 December, 2013.
Arief, Vivi, DeLacy, Ian, Tian, Ting, Crossa, Jose, Braun, Hans-J., Basford, Kaye and Dieters, Mark (2013). Evaluation of two-times testing for CIMMYT's international wheat nurseries. WBA Brisbane 2013: Wheat Breeding Assembly, Brisbane, QLD, Australia, 16-19 July, 2013. Brisbane, QLD, Australia:
Menzies, Neal and Basford, Kaye (2012). Is agricultural science training in Australia in decline? Implications for our industries. 34th Conference of the Australian Society of Sugar Cane Technologogists, Cairns, Australia, 1-4 May 2012. Mackay, Qld., Australia: Australian Society of Sugar Cane Technologists.
Arief, Vivi, DeLacy, Ian, Basford, Kaye and Dieters, Mark (2012). Optimised dendrogram: extracting population information using seriation to enhance hierarchical clustering. 4th International Conference on Quantitative Genetics, Edinburgh, Scotland, 17-22 June 2012.
Basford, Kaye E. (2011). IBS: Transforming our governance. Oxford, U.K.: Wiley-Blackwell Publishing. doi: 10.1111/j.1541-0420.2011.01670.x
Arief, V. N., DeLacy, I. H., Wenzl, P., Basford, K. E., Driesigacker, S., Crossa, J. and Dieters, M. J. (2011). Relationships among markers based on haplotype combinations in populations of related homozygous genotypes. Wheat Breeding Assembly, Perth, Australia, 24 - 26 August 2011.
DeLacy, I. H., Arief, V. N. and Basford, K. E. (2011). Status Analysis: projecting genotype performance into long-term environment discrimination space. Australasian Applied Statistical Conference, Cairns, Australia, 11-15 July 2011.
DeLacy, I. H., Arief, V. N., Payne, T., Braun, H.-J. and Basford, K. E. (2011). Extending status analysis to project genotype performance into long-term environment discrimination space –an example. Wheat Breeding Assembly, Perth AUSTRALIA, 24 - 26 August 2011.
Arief, V. N., Kroonenberg, P. M., DeLacy, I. H., Dieters, M. J., Crossa, J. and Basford, K. E. (2010). Construction and three-way ordination of the Wheat Phenome Atlas. Tenth Islamic Countries Conference on Statistical Sciences (ICCS-X), Cairo, Egypt, 20-23 December 2010. Lahor, Pakistan: The Islamic Countries Society of Statistical Sciences (ISOSS).
Arief, Vivi N., DeLacy, Ian H., Crossa, Jose, Dieters, Mark J. and Basford, Kaye E. (2010). The use of pedigree, molecular marker and phenotypic data to investigate population structures in 25 years of the CIMMYT global wheat breeding program. 8th International Wheat Conference, St. Petersburg, Russia, 1-4 June 2010. St. Petersburg, Russia: N.I. Vavilov Research Institute of Plant Industry (VIR).
Duran, Chris, Eales, Dominic, Marshall, Daniel, Imelfort, Michael, Stiller, Jiri, Berkman, Paul J., Clark, Terry, McKenzie, Megan, Appleby, Nikki, Batley, Jacqueline, Basford, Kaye and Edwards, David (2010). Future tools for association mapping in crop plants. International Conference on Exploiting Genome Wide Association in Oilseed Brassicas - A Model for genetic Improvement of Major OECD Crops for Sustainable Future Farming, Perth, WA, Australia, 9 - 12 November 2009. Ottawa, ON, Canada: N R C Research Press. doi: 10.1139/G10-057
Arief, Vivi N., DeLacy, Ian H., Crossa, Jose, Dieters, Mark J. and Basford, Kaye E. (2010). The use of pedigree, molecular marker and phenotypic data to investigate population structures in 25 years of the CIMMYT global wheat breeding program. Eighth International Wheat Conference, St Petersburg, Russia, 1 - 4 June 2010. St. Petersburg, Russia: Vavilov Research Institute of Plant Industry.
Arief, Vivi N., Kroonenberg, Pieter M., DeLacy, Ian H., Dieters, Mark J., Crossa, Jose, Dreisigacker, Susanne, Braun, Hans-J. and Basford, Kaye E. (2010). Three-way ordination of rust GWAS using 25 years of one of CIMMYT global wheat breeding programs. Borlaug Global Rust Initiative 2010 Technical Workshops, St. Petersburg, Russia, 30-31 May 2010.
Halling-Brown, Mark, Pappalardo, Francesco, Rapin, Nicolas, Zhang, Ping, Alemani, David, Emerson, Andrew, Castiglione, Filippo, Duroux, Patrice, Pennisi, Marzio, Miotto, Olivo, Churchill, Daniel, Rossi, Elda, Moss, David S., Sansom, Clare E., Bernaschi, Massimo, Lefranc, Marie-Paule, Brunak, Soren, Lund, Ole, Motta, Santo, Lollini, Pier-Luigi, Murgo, Annalisa, Palladini, Arianna, Basford, Kaye E., Brusic, Vladimir and Shepherd, Adrian J. (2010). ImmunoGrid: Towards agent-based simulations of the human immune system at a natural scale. 4th International Congress on Computational Bioengineering/1st European Symposium on Biomedical Integrative Research, Bertinoro, Italy, 16-18 September 2009. London, U.K.: Royal Society. doi: 10.1098/rsta.2010.0067
Hardner, C., Dieters, M., Delacy, I., Neal, J., Fletcher, S., Dale, G. and Basford, K. (2009). Identifying deployment zones for Eucalyptus camaldulensis x E. globulus and x E. grandis hybrids using factor analytic modelling of genotype by environment interaction. Australasian Forest Genetics Conference, Perth Western Australia, 20-22 April, 2009. Forest Products Commission.
Arief, V. N., Delacy, I. H., Dieters, M. J., Crossa, J., Dreisigacker, S. and Basford, K. E. (2009). Pattern analysis of marker-trait association profiles derived from 25 years of international wheat performance trials. 14th Australasian Plant Breeding Conference (APBC) and the 11th Congress of the Society for the Advancement of Breeding Research in Asia and Oceania (SABRAO). Contemporary Crop Improvement: A Tropical View, Cairns, Australia, 10-14 August 2009. Bangkok, Thailand: Society for Advancement of Breeding Research in Asia and Oceania.
Arief, V. N., Delacy, I. H., Crossa, J., Kroonenberg, P. M., Dieters, M. J. and Basford, K. E. (2009). Ordination of marker-trait association profiles from long-term international wheat trials. Biometrics 2009: Biometrics on the Lake. The International Biometric Society Australasian Region Conference, Taupo, New Zealand, 29 November-3 December 2009. International Biometric Society Australasian Region (IBS AR).
Arief, Vivi N., Kroonenberg, Pieter M., DeLacy, Ian H., Dieters, Mark J., Crossa, Jose and Basford, Kaye E. (2009). An application of wheat phenome atlas using three-way principal component analysis. OECD Genome Association Oz09, Perth, Australia, 9-12 November 2009.
Zhang, P., Brusic, V. and Basford, K. (2009). A hybrid model for prediction of peptide binding to MHC molecules. Advances in Neuro-Information Processing, Auckland, New Zealand, 25-28 November, 2008. Berlin, Germany: Springer-Verlag. doi: 10.1007/978-3-642-02490-0_65
Dieters, M. J., Crossa, J., Godwin, I. D., Batley, J., Davenport, G., Dreisigacker, S., Edwards, D., Huttner, E., Lambrides, C. J., Manes, Y., Payne, T., Singh, R. P., Duveiller, E., Warburton, M., Wenzl, P., Kilian, A., McLaren, G., Braun, H-J., Crouch, J., Ortiz, R. and Basford, K. E. (2008). A wheat phenome atlas and phenome atlas toolbox. ASC2008: Australian Statistics Conference, Melbourne, Vic, Australia, 30 June - 3 July, 2008.
Hunt, L. A. and Basford, K. E. (2008). Model selection using the multimix class of mixture models. International Conference on Multivariate Statistical Modeling and High Dimensional Data Mining, Kayseri, Turkey, 19-23 June, 2008.
DeLacy, Ian H., Dieters, Mark J., Crossa, Jose, Godwin, Ian D., Arief, Vivi N., Batley, Jacqueline, Davenport, Guy, Dreisigacker, Susanne, Edwards, David, Huttner, Eric, Lambrides, Christopher J., Manes, Yann, Payne, Thomas, Singh, Ravi P., Duvieller, Etienne, Warburton, Marilyn, Wenzl, Peter, Kilian, Andrzej, McLaren, Graham, Braun, Hans-J., Crouch, Jonathan, Ortiz, Rodomiro and Basford, Kaye E. (2008). Towards a wheat phenome atlas and a phenome atlas toolbox: What are they? What progress?. 11th International Wheat Genetics Symposium, Brisbane, Queensland, 24-29 August 2008. Sydney, Australia: Sydney University Press.
Godwin, Ian D., DeLacy, Ian H., Arief, Vivi N., Dieters, Mark J., Lambrides, Christopher J., Basford, Kaye E., Crossa, Jose, Dreisigacker, Susanne, Kilian, Andrzej, Huttner, Eric, Crouch, Jonathan and McLaren, Graham (2008). Developing the wheat phenome atlas: Integrating 25 years of international wheat phenotypic data with genome analysis. 5th International Crop Science Conferences, Jeju, South Korea, 13-18 April, 2008.
Hu, Fengduo, Jackson, Phillip and Basford, Kaye E. (2008). Developing Optimal Selection Systems in Sugarcane Breeding Programs. Thirtieth Conference Townsville, 2008, Townsville, 29 Aprill 2008 to 2 May 2008. Brisbane, Queensland, Australia: Publishing Project Management Scribe Consulting.
Arief, Vivi N., DeLacy, Ian H., Dieters, Mark J., Crossa, Jose, Godwin, Ian D., Batley, Jacqueline, Davenport, Guy, Dreisigacker, Susanne, Duvieller, Etienne, Edwards, D., Huttner, E., Lambrides, C., Manes, Y., Payne, T., Singh, R. P., Warburton, Marilyn, Wenzl, Peter, Kilian, Andrzej, McLaren, Graham, Braun, Hans-J., Crouch, Jonathan, Ortiz, Rodomiro and Basford, Kaye E. (2008). Marker/trait associations identified in spring wheat using 25 years of CIMMYT International Trials. 11th International Wheat Genetics Symposium, Brisbane, QLD Australia, 24-29 August 2008. Sydney, NSW Australia: Sydney University Press.
Arief, Vivi N., DeLacy, Ian H., Dieters, Mark J., Crossa, Jose, Godwin, Ian, Batley, Jacqueline, Davenport, Guy, Dreisiqacker, Susane, Edwards, Dave, Huttner, Eric, Lambrides, Christopher, Manes, Yan, Payne, Thomas, Singh, Ravi P., Warburton, Marilyn, Wenzl, Peter, Williams, Manila, Kilian, Andrezj, McLaren, Graham, Crouch, Jonathan and Basford, Kaye E. (2008). Association between phenotype and DArT markers in spring wheat using 25 years Of CIMMYT international field trial data. Plant & Animal Genomes XVI Conference, San Diego, USA, 12-16 January 2008.
DeLacy, Ian H., Arief, Vivi N., Dieters, Mark J., Crossa, Jose, Godwin, Ian, Batley, Jacqueline, Davenport, Guy, Dreisiqacker, Susane, Edwards, Dave, Huttner, Eric, Lambrides, Christopher, Manes, Yan, Payne, Thomas, Singh, Ravi P., Warburton, Marilyn, Wenzl, Peter, William, Manilal, Kilian, Andrzej, McLaren, Graham, Crouch, Jonathan and Basford, Kaye E. (2008). A comparison of three genotype structures for 686 lines derived from pedigrees (COP), 1400 DArT markers and 420,000 data points from 25 Years of CIMMYT international bread wheat trials. Plant and Animal Genome XVI Conference, San Diego, CA, U.S.A., 12-16 January 2008.
Hunt, Lyn and Basford, Kaye (2008). Model selection for the Multimix class of mixture models. 59th Annual Conference of the New Zealand Statistical Association 2008, Hamilton, New Zealand, 1-2 September 2008. Hamilton, New Zealand: New Zealand Statistical Association.
Redden, Robert J., Basford, Kaye E., Kroonenberg, Pieter M., Islam, F.M. Amirul, Ellis, Rodney, Wang, Shumin, Yongsheng, Cao and Wang, Xiaoming (2008). Variation in the Chinese adzuki bean germplasm. XXIVth International Biometric Conference, Dublin, Ireland, 13-18 July 2008.
Micallef, Alexandra, Ye, Gouyou, DeLacy, Ian H. and Basford, Kaye E. (2006). CIS (International Crop Information System) for Australian breeding programs. 13th Australasian Plant Breeding Conference, Christchurch, New Zealand, 18-21 April 2006.
Hunt, L. A. and Basford, K. E. (2006). Model selection with the Multimix class of mixture models. Australian Statistical Conference/ New Zealand Statistical Association Conference 2006, Auckland, New Zealand, 3 - 6 July, 2006.
Micallef, A., Ye, G., DeLacy, I. H. and Basford, K. E. (2006). Australian wheat breeding programs - Enhanced evaluation of CIMMYT germplasm. 13th Australasian Plant Breeding Conference, Christchurch, New Zealand, 18-21 April, 2006.
DeLacy, I. H., Micallef, A. and Basford, K. E. (2006). ICIS (International Crop Information System) for Australian breeding programs. 13th Australasian Plant Breeding Conference, Christchurch, New Zealand, 18-21 April, 2006.
Basford, K. E. and Hunt, L. A. (2006). Clustering incomplete mixed three-mode three-way data. Australian Statistical Conference/New Zealand Statistical Association, Auckland, New Zealand, 3-6 July 2006.
Basford, K. and Brusic, V. (2006). Analysis of allergens from genomics to medicine. XXIIIrd International Biometric Conference [IBC], McGill University, Montreal, 16-21 July 2006.
Hunt, L. A. and Basford, K. E. (2006). Model selection with the Multimix class of mixture models. Australian Statistical Conference and the New Zealand Statistical Association Conference, Auckland, New Zealand, 3-6 July 2006.
Basford, Kaye, McLachlan, Geoff and Bean, Richard (2006). Issues of robustness and high dimensionality in cluster analysis. 17th Symposium on Computational Statistics (COMSTAT 2006), Rome, Italy, 28 August - 1 September 2006. Rome, Italy: Physica-Verlag. doi: 10.1007/978-3-7908-1709-6_1
Basford, K. E., Delacy, I. H. and Brusic, V. (2005). Some issues in the application of informatics in plant breedings. How to utilize crop diversity for productivity and sustainability Breeding Science and Technology for the new era, Tsukuba, Japan, 22-23 August, 2005. Japan: Society for the Advmt of Breeding Researchers in Asia and Ocs.
Delacy, I. H., Dieters, M., Wang, J. and Basford, K. E. (2005). Computer simulation of plant breeding programs. 4th International Food Legume Research Conference, New Delhi, India, 20-22 October, 2005.
Ellis, R. N., Kroonenberg, P. M., Harch, B.D. and Basford, K. E. (2004). Analysing environmental data from the Great Barrier Reef using nonlinear principal component analysis. IBC2004 XXIInd Interntional Biometric Conference, Cairns, Qld, 11-16 July, 2004. Sydney: IBC.
Ye, Guoyou , Dieters, Mark , Pudmenzky, Alexander , Micallef, Kevin and Basford, Kaye (2004). Simulation of positive assortative mating for inbred line development using QU-GENE. 4th International Crop Science Congress, Brisbane, QLD, Australia, 26 September - 1 October 2004.
Kroonenberg, P.M., Basford, K. E. and Gemperline, P.J. (2004). Grouping three-mode data with mixture methods: the case of the diseased blue crabs. IBC2004 XXIInd International Biometric Conference, Cairns, Qld, 11-16 July 2004. Sydney: IBC.
Garcia, A., Ward, P., Appleby, N., Basford, K. E. and Ragan, M. A. (2004). From genotype to phenotype: modeling knowledge in functional plant genomics. Summer Symposium in Bioinformatics, Australian National University, Canberra, 6-10 December, 2004. Canberra: Australian mathematical Sciences Institute.
Meier, E. A., Thorburn, P. J., Goodson, M. A., Wegener, M. K. and Basford, K. E. (2003). Sugarcane Crop Residues - Cropping and Environmental Synchrony in the Wet Tropics. UQ NRAVS 2003 Research Conference, Gatton, Qld, 3 November, 2003. Brisbane: The University of Queensland.
Hunt, Lyn and Basford, Kaye (2003). Mixture method clustering of mixed three-mode three-way data with missing information. 13th International Meeting of the Psychometric Society, Sardinia, Italy, 7-10 July 2003.
Meier, E. A., Thorburn, P. J., Goodson, M., Wegener, M. K. and Basford, K. E. (2003). Optimisation of Nitrogen Supply from Sugarcane Residues in the Wet Tropics. 11th Australian Agronomy Conf: Solutions for a Better Environ., Geelong, Victoria, 2-6 February, 2003. Horsham, Australia: The Australian Society of Agronomy.
Meier, E. A., Thorburn, P. J., Goodson, M. A., Wegener, M. K. and Basford, K. E. (2003). Nitrogen from Sugarcane Residues in the Wet Tropics and the Implications for Nitrogen Fertilizer Rates. UQ NRAVS 2003 Research Conference, Gatton, Qld, 3 November, 2003. Brisbane: The University of Queensland.
Meier, E. A., Thorburn, P. J., Goodson, M. A., Wegener, M. K. and Basford, K. E. (2003). Management of Sugarcane Crop Residues for Nitrogen Supply in the Australian Wet Tropics. Soil Management for Sustainability : 16th International Soil Tillage Research Organisation (ISTRO) Conference, The University of Queensland, Brisbane, 13-18 July, 2003. Brisbane: International Soil Tillage Research Organisation.
Basford, K. and Hunt, L. (2003). Mixture method clustering of mixed three-mode three-way data. International Meeting of the Psychometric Society 2003, Sardinia, Italy, 7-10 July, 2003. Psychometric Society.
Islam, A. F., Redden, R., Basford, K. E., Wang, S. and Yongsheng, C. (2002). Adzuki bean core germplasm analysis for quantitative traits. 12th Australasian Plant Breeding Conference, Perth, Western Australia, 15-20 September, 2002. Perth, W.A.: The Australasian Plant Breeding Association.
Basford, Kaye, DeLacy, I. H. and Cooper, M. (2002). Correlated Genetic Advance from Multi-Environment Trials to the Target Population of Environments. Australasian Genstat Conference 2002, Busselton, Western Australia, 4-6 December 2002.
Meier, E. A., Thorburn, P. J., Wegener, M. K. and Basford, K. E. (2002). A systems approach to investigation of the contribution of trash to soil nitrogen in the wet tropics. 24th Australian Society of Sugar Cane Technologists., Cairns, 29 April-2 May, 2002.
Meier, Elizabeth, Thorburn, Peter, Wegener, Malcolm and Basford, Kaye (2002). Organic Matter Dynamics in the Wet Tropics Under Different Sugarcane Residue Management Regimes. 17th World Congress of Soil Science, Bangkok, 14th -21st August, 2002. Bangkok, Thailand: International Union of Soil Science.
Hammer, G. L., Basford, K. E., Delacy, I. H., Chapman, S. C. and Cooper, M. (2002). The unit for modelling plant breeding programs at The University of Queensland. 12th Australasian Plant Breeding Conference, Perth, Western Australia, 15-20 September 2002. Perth, WA, Australia: The Australasian Plant Breeding Association.
Bradley, D., Hardner, C., Mathews, K., Mason, R. and Basford, K. (2002). Sources of oil content variation in macadamia kernel. 12th Australasian Plant Breeding Conference, Perth, Western Australia, 15-20 September 2002. Perth, W.A.: The Australasian Plant Breeding Association.
Meier, E. A., Thorburn, P. J., Wegener, M. K. and Basford, K. E. (2002). Where does trash nitrogen go – to the crop or soil?. 24th Conference of the Australian Society of Sugar Cane Technologists, Cairns, Queensland, 29 April - 2 May 2002. PK Editorial Services.
Bradley, D., Hardner, C., Mathews, K., Mason, R., Basford, K. and McConchie, C. (2002). Macadamia varietal improvement for quality. MANIC 2002 :Incorporating the Australian Nut Industry Council Conference 2002 and the Australian Macadamia Society Annual Conference, Coffs Harbour, 9-10 October, 2002. Lismore, NSW: Australian Macadamia Society.
Lawes, R., Lawn, R. J., Wegener, M. K. and Basford, K. E. (2002). Understanding and Managing the Late Time of Ratooning Effect on Cane Yield. Australian Society of Sugar Cane Technologists (ASSCT) 24th Annual Conference, Cairns, Qld, 29 April - 2 May, 2002. Brisbane: Australian Society of Sugar Cane Technologists.
Kruger, N. L., Cooper, M., Podlich, D., Jensen, N. and Basford, K. E. (2001). The effect of population size on QTL detection in recombinant inbred lines. Wheat Breeding Society of Australia Inc. 10th Assembly, Mildura, Victoria, Australia, 16-21 September, 2001. Australia: Wheat Breeding Society of Australia Inc..
Levitt, C. W., Hardner, C., Stephenson, R., Mathews, K. L. and Basford, K. E. (2001). Assessment protocols for selection and management in Macadamia. AMS 2001 Conference and Annual General Meeting, Tweed Heads, NSW, 25-27 October, 2001. Lismore, NSW: Australian Macadamia Society Limited.
Ovenden, J., Courtney, T., Basford, K. E., Podlich, H. M. and Dichmont, C. (2001). Development of a genetic method to estimate effective spawner numbers in tiger prawn fisheries. 3eme Cycle Meeting: Conservation Genetics, Lausanne University, 12-14 September, 2001.
Lawes, R., Lawn, R. J., Wegener, M. K. and Basford, K. E. (2001). Spatial Variation of Sugarcane Productivity in the Tully Mill District: Is it worth worrying about?. The Australian Society of Sugar Cane Technologists, Mackay, Mackay Entertainment Centre, Mackay, 1-4 May, 2001. Brisbane: Australian Society of Sugar Cane Technologists.
Lawes, R. A., Wegener, M. K., Lawn, R. J. and Basford, K. E. (2001). Insights into production characteristics of cane yield and trends in CCS gained from investigations into commercial block productivity data. International Society of Sugar Cane Technologists, Brisbane, Australia, 17-21 September 2001. Mackay, Australia: The XXIV ISSCT Congress Organising Committee.
Bradley, D., Hardner, C., Mathews, K. L., Mason, R. L. and Basford, K. E. (2001). Quality and kernel composition - influences and interactions. 2001 AMS Conference and Annual General Meeting, Tweed Heads, NSW, 25-27 October, 2001. Lismore, NSW: Australian Macadamia Society Limited.
Basford, KE (2001). Statistical interaction with quantitative geneticists to enhance impact from plant breeding programs. Workshop on Statistics and the Sciences, Ascona Switzerland, May 23-28, 1999. BASEL: BIRKHAUSER VERLAG AG.
Hunt, L. A. and Basford, K. E. (2000). Fitting a mixture model to three-mode three-way data with missing information. 15th Australian Statistical Conference, Adelaide Hilton International, 3-7 July 2000. Adelaide: Statistical Society of Australian Inc.
Basford, K. E., Federer, W. T., De Lacy, I. H. and Smyth, G. (2000). The mixed model formulation for multi-environment trials. The XXth International Biometric Conference, San Francisco, The University of California, Berkeley, 1-7 July 2000. San Francisco: International Biometric Society.
Hunt, L. A. and Basford, K. E. (2000). Mixture model clustering of three-way data with missing information. CSNA 2000, Montreal, Canada, 8-11 June 2000. Montreal: Classification Society of North America.
Ellis, R., Basford, K. E., Cooper, M., Leslie, J. K. and Byth, D. E. (2000). Analysis of sugarcane yield productivity trends in the wet tropics at a district level. 2000 Conf of the Aust Soc of Sugar Cane Technologists, Bundaberg, Queensland, 2-5 May, 2000. Brisbane: Australian Society of Sugar Cane Technologists.
Qiao, C., DeLacy, I. H., Cooper, M. and Basford, K. E. (1999). Effect of check genotypes on the combined analysis of wheat breeding multi-environment trials. Vision 2020, The Univ. of Southern Qld, Toowoomba, 27 September - 1 October 1999. Toowoomba, Qld: Organising Committee Aust. Wheat Breeding Society.
Qiao, C., Basford, K. E., DeLacy, I. H. and Cooper, M. (1999). Application of different experimental designs and analytical methods in the analysis of variety trials. 11th Australian Plant Breeding Conference, Stamford Grand Hotel, Glenelg, SA, 19-23 April 1999. Adelaide: Univ. of Adelaide (Waite Campus), SA.
Greenway, D. R., Peel, D., Basford, K. E. and McLachlan, G. J. (1999). Extending the two-way mixture model program EMMIX to analyse incomplete data. Biometrics 99, Univ. of Tas., Hobart, Tas, Aust., 12-16 December 1999. Hobart, Aust.: Int. Biomtric Society, Australasian Region.
Islam, A. F., Basford, K. E., Redden, R., Gonzalez, A. V. and Beebe, S. (1999). Evidence for more than two gene pools in the origin of cultivated common bean. Biometrics 99, Hobart, Australia, 12-16 December 1999. Hobart, Aust.: Int. Biometric Society Australasian Region.
Tangku, B. S., Taverne, A. A., Symons, A.L., Basford, K. E. and Harbrow, D. (1999). The effects of statis magnetic fields on orthodontic tooth movement: a histological study. 16th Australian Orthodontic Congress, Canberra, Australia, 22-26 March, 1998. Bendigo: Aust. Society of Orthodontists.
Redden, R., Islam, A. F., Beebe, S. and Basford, K. E. (1999). Phaseolus vulgaris, core germplasm analyses and evolutionary history. 11th Australian Plant Breeding Conference, Stambord Grand Hotel, Glenelg, Adelaide, 19-23 April 1999. Adelaide: Grains Research & Development Corporation.
Matassa, V. J., Basford, K. E. and Jackson, P. A. (1999). Intergenotypic competition in single-row plots of sugarcane variety trials. Australian Society of Sugar Cane Technologists, Townsville, Qld, 27-30 April 1999.
Hunt, L. A. and Basford, K. E. (1999). Fitting a mixture model to three-way data with missing information. Biometrics 99, Univ. of Tas., Hobart, Tas, Aust., 12-16 December 1999. Hobart, Aust.: Int. Biometric Society, Australasian Region.
Qiao, C., Basford, K. E., Cooper, M., DeLacy, I. H., Phillips, I. G. and Matassa, V. J. (1999). Quantifying the effect of analytical methods on estimates of heritability from wheat multi-environment trials. Biometrics 99, Univ. of Tas., Hobart, Tas, Aust., 12-16 December 1999. Hobart, Aust.: Int. Biometric Society, Australasian Region.
Mullen, BF, Shelton, HM, Basford, KE, Castillo, AC, Bino, B, Victorio, EE, Acasio, RN, Tarabu, J, Komolong, MK, Galgal, KK, Khoa, LV, Co, HX, Wandera, FP, Ibrahim, TM, Clem, RL, Jones, RJ, Middleton, CH, Bolam, MJM, Gabunada, F, Stur, WW, Horne, PM, Utachak, K and Khanh, TT (1998). Agronomic adaptation to environmental challenges in the genus Leucaena. Workshop on Leucaena - Adaptation, Quality and Farming Systems, Hanoi Vietnam, Feb 09-14, 1998. CANBERRA: AUSTRALIAN CENTRE INT AGRICULTURAL RESEARCH.
Schotz, AH, Asher, CJ, Blamey, Fpc and Basford, KE (1990). Manganese Toxicity in Sunflower Lines. 3rd International Symp On Genetic Aspects of Plant Mineral Nutrition, Braunschweig Fed Rep Ger, 1988.
Basford, KE, Delacy, IH and Dalton, R (1979). Comparison of Different Genotypic Models Using Generation Means. WASHINGTON: INTERNATIONAL BIOMETRIC SOC.
Department Technical Report
Ovenden, Jenny, Street, Raewyn, Peel, David, Peel, Sam, Courtney, Tony, Podlich, Heather, Basford, Kaye and Dichmont, Cathy (2004). A new data source for fisheries resource assessment: Genetic estimates of the effective number of spawners. Final Report to the Fisheries Research and Development Corporation.. Project Reports, Project Report QO 04010. Department of Primary Industries & Fisheries, Fisheries Research and Development Corporation.
Thesis
Basford, Kaye Enid (1985). Cluster analysis via normal mixture models. PhD Thesis, School of Physical Sciences, The University of Queensland. doi: 10.14264/uql.2015.11
Research Reports
Ellis, R. N., Harch, B.D., Basford, K. E. and Pitcher, C. (2005). Understanding epibenthic community structure in the Great Barrier Reef using various ordination techniques. The University of Queensland: Department of Mathematics.
Ovenden, J., Street, R., Peel, D., Peel, S., Courtney, T., Podlich, H. M., Basford, K. E. and Dichmont, C. (2004). Development of a genetic method to estimate effective spawner numbers in the NPF and Queensland tiger prawn fisheries. Brisbane, QLD Australia: Department of Primary Industries and Fisheries.
Meier, E. A., Thorburn, P. J., Wegener, M. K. and Basford, K. E. (2002). A Systems Approach to Investigating the Contribution of Trash to Soil Nitrogen in the Wet Tropics. Townsville, QLD Australia: Cooperative Research Centre for Sustainable Sugar Production, James Cook University.
Kroonenberg, P. M. and Basford, K. E. (2002). Applied three-mode data analysis - Three-mode clustering. The University of Queensland: Department of Mathematics.